Logistics pipes was recently added to curse mods. So you have to put that mod into your manifest now. Same goes with Thaumic Exploration. If it comes again just make sure to check whats in your overrides folder and make sure its not on curse.
I just had this problem and that solved it for me! Hope this helps :)
Sorry about that, we don't have a good way of auto telling people which mods are already on Curse. I have a request in for that so it will go "these mods are in overrides and need to be in the manifest" . But right now.. it doesn't :(